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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25462000
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKALITSP DISSGQLYIK LPTFFHLYVW PFALFVYPYI GYVYQNKLYS EEVRYLTYIA  60
   61 VGTIHALFWL AGEWNTKVYC LMTCRKTDKV EQATHILVTP SKIGESSSVE PITKLVLPDS 120
  121 QTIQYSFSFQ RKRFIYEPEK GCFANITFPM DEPSTIGTLK KSTGLTNIQS EIFLYRYGKN 180
  181 CFDIPIPTFG TLFKEHAVAP FFVFQIFCCV LWCLDDYWYF SLFSMFMIIA LECSVWWQRQ 240
  241 RTLTEFRTMS IKPYEIQVYR NKHWFPISTE DLLPNDVVSV LHNKEDSGLP CDLLLLSGSC 300
  301 VVNEAMLSGE STPLVKESIE LRPEEAVIDV DELDKNAVLF GGTRVLQVTQ SPFCKLKTPD 360
  361 NGVPAIVLRT GFETSQGSLV RTMVFSSEKV TANNRESLYF ILFLLVFAIA ASGYVWHVGS 420
  421 KTERSRYKLM LDCVMIITSV VPSELPMELS MAVNASLGAL SKYYIYCTEP FRIPLSGHLD 480
  481 ICCFDKTGTL TEEHMVVQGI AGVNRKDPYS LEKLSDASND AILAIATAHT LVLLEQEGET 540
  541 PKVVGDPMEK ATVENLGWSI EKKNFVSAPE GSVFYKGKVQ IIRNFQFSSA LKRQSSVSNV 600
  601 RVSGGSFKTF VSVKGAPEVI ATMLREVPKD YEKIYKDYGR KGSRVLALGY KYFKNYIPEN 660
  661 QVSDLSRESI ESDLVFAGFL IFTSPLKEDA RQTVQMLNNS SHRCMMITGD NPLTAVYVAE 720
  721 QVGIVEKPTL VLDIKHENEK ILEWKSTDDT INLPMNPHKS LEASLYEKYD LCITGRALSQ 780
  781 IINPDVIMSI FTHAWVYARV SPSQKEFMIS TLKHNGYITL MCGDGTNDVG ALKQAHVGVA 840
  841 LLNASEEDML EMQERARNQK LMGVYEKQIQ LAKRFNLPTP PVPPALCHAF PPGPNNPHRE 900
  901 KTQEGLNKVL EDLETKKASD VQLTEAEKAA ERRANLANKM FDTLANASDD EAPKLKLGDA 960
  961 SVAAPFTSKL AVVSSITNIV RQGRCTLVAL VQMHKILALN CLITAYSLSV LHLDGIKFGD1020
 1021 TQYTISGMLM SVCFYCVSRA RPLETLSKER PQAGIFNTYI IGSVLGQFAI HIVTLIYITR1080
 1081 VVYLYEDPLE KVDLEETFKP SLLNTAIYLL QLIQQVSTFA INYQGRPFRE ALSENKGMYY1140
 1141 GLLGIAFVAI AGVTEFSPEL NAKLQLVKMA YNFQIQLLAT MVVDYAACWI IEELMKKYFR1200
 1201 DNKPKEIVLR N

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle