YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1661219
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.86
Transmembrane Helix	32	52	0.71
Non-Cytoplasmic	53	65	0.73
Transmembrane Helix	66	88	0.89
Cytoplasmic	89	97	0.88
Transmembrane Helix	98	117	0.96
Non-Cytoplasmic	118	123	0.73
Transmembrane Helix	124	148	0.79
Cytoplasmic	149	166	0.82
Transmembrane Helix	167	190	0.91
Non-Cytoplasmic	191	198	0.88
Transmembrane Helix	199	219	0.91
Cytoplasmic	220	257	0.97
Transmembrane Helix	258	279	0.91
Non-Cytoplasmic	280	296	0.91
Transmembrane Helix	297	318	0.92
Cytoplasmic	319	326	0.86
Transmembrane Helix	327	346	0.96
Non-Cytoplasmic	347	352	0.79
Transmembrane Helix	353	376	0.89
Cytoplasmic	377	387	0.82
Transmembrane Helix	388	410	0.90
Non-Cytoplasmic	411	418	0.85
Transmembrane Helix	419	438	0.94
Cytoplasmic	439	500	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRKKVKPI TLRDVTIIDD GKLRKAITAA SLGNAMEWFD FGVYGFVAYA LGKVFFPGAD  60
   61 PSVQMVAALA TFSVPFLIRP LGGLFFGMLG DKYGRQKILA ITIVIMSIST FCIGLIPSYD 120
  121 TIGIWAPILL LICKMAQGFS VGGEYTGASI FVAEYSPDRK RGFMGSWLDF GSIAGFVLGA 180
  181 GVVVLISTIV GEENFLDWGW RIPFFIALPL GIIGLYLRHA LEETPAFQQH VDKLEQGDRE 240
  241 GLQDGPKVSF KEIATKHWRS LLTCIGLVIA TNVTYYMLLT YMPSYLSHNL HYSEDHGVLI 300
  301 IIAIMIGMLF VQPVMGLLSD RFGRRPFVLL GSVALFVLAI PAFILINSNV IGLIFAGLLM 360
  361 LAVILNCFTG VMASTLPAMS PTHIRYSALA AAFNISVLVA GLTPTLAAWL VESSQNLMMP 420
  421 AYYLMVVAVV GLITGVTMKE TANRPLKGAT PAASDIQEAK EILVEHYDNI EQKIDDIDHE 480
  481 IADLQAKRTR LVQQHPRIDE