YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157750712
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLTVLGSNL TARHFVKYLS SEHPSVQISL WTYDEAQYPE FDNIATCLRY HGIKMLPNAL  60
   61 LCADAVVNLH ECTDFSMLPD VGKLQLHNVE VVRSLLFHCN FPLIHLSTPF LQCSHRWPNV 120
  121 YEPERDPVVF RPQWPFPEYC ASKYEAEQLV KSASNDCYIV RSVPTYGEGD NCSILTDLIY 180
  181 LSNDGTVVPL GDNDGHMQMA YAGNVSVALW SAVCRLLSQS TCTDLNVSYE EELNDILSSA 240
  241 ENSFRYQQEN EKLTDGIKPG LYAIKEEDEN LEGYRARHNT VRTSFDGDCD WKKGCEETEE 300
  301 GDVFGDDKVL QENDGAAVQE NAETTYFSII KDSTSTVQNQ RIFEIFLIND DTPKKTIYNT 360
  361 FEQLLYNSKR LRSATQLSFI PLYYIYLLIS MIIQFAIKLI GPLRFATMLP NPSFLYFYFH 420
  421 HWTFFNSTKS LLMLGYKPQL GFKESVSKCA QHYRELRKKD VEIFSWQNSM IYPEASNTTI 480
  481 AVR

Type	Start	End	Confidence
Non-Cytoplasmic	1	378	0.69
Transmembrane Helix	379	401	0.83
Cytoplasmic	402	483	0.58