YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187036834, gi...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLRNVKIFF ARWKYLMFAC CVTYLLVVYA PFPNSNQKNW REGEIELSNE HETEKTEAKK  60
   61 EEEKTDKNKV FKFNPVGKEP FDVEEILTSS DIKISERMNA NVKPGEKRII LSWNAGHSPD 120
  121 NLQGCPDWNC EFTQVRSRVN EAAAVLIAHN DPDFKPTPDQ YVLYFSQESP ANSGISLPRT 180
  181 DFVNMTLGFR HDTPAGSPYG YSVKLGPKSR LQGPVVDASL VKGKSKGAAW FVSHCQTSSR 240
  241 REEFVRRLQK HIQIDIYGGC GPMKCPRGNK KCDTMLDTDY HFYVTFENSI CQDYVTEKLW 300
  301 KSGYQNTIIP LVLKRKLVEP FVPPNSFIAV DDFKSVREMG DHLKYLMSNN TAYMEYFEWR 360
  361 RDYKVIFLDG SHHDVLERPW GFCQVCRMAW TDPRQRVIIP NWDVYWRQSC EKDGELVKSI 420
  421 PDVL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.78
Transmembrane Helix	13	32	0.83
Non-Cytoplasmic	33	424	0.99