YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39597321, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLLAGKQLI KFSQLPRISL LSHGYQNVQQ GFRRSLGISV KNVDDKSRKR IGWWLMGCAG  60
   61 MCYGAVALGG VTRLTESGLS MVNWDLFKTM KPPFGQKQWE EEFEKYKAYP EYKFKSSNQE 120
  121 MTLNEFKFIW SMEYGHRMWG RAIGLVFLIP CAYFWARGRF GPDMKRRMAV ATTLLLAQGG 180
  181 IGWWMVKSGL DPSQNSSDVP RVSQYRLATH LTMAFVLYSI FFWNGLTHLL KPYDLSAVRS 240
  241 KLGALRGMTH GSKLMVFSTA IMGAFVAGLD AGLVYNSWPK FADKWVPENM LSRSPAWKNF 300
  301 FENDVTVQFV HRNLAYLTVI SVLSTFLIGR RAPIPKRTRM ALNLTVAAVF GQAALGVFTL 360
  361 INYVPVWLAA CHQSGSMALL SSVLWLSHEL RRLPK

Type	Start	End	Confidence
Cytoplasmic	1	50	0.99
Transmembrane Helix	51	74	0.90
Non-Cytoplasmic	75	137	0.98
Transmembrane Helix	138	156	0.97
Cytoplasmic	157	167	0.85
Transmembrane Helix	168	186	0.96
Non-Cytoplasmic	187	206	0.94
Transmembrane Helix	207	230	0.87
Cytoplasmic	231	250	0.92
Transmembrane Helix	251	273	0.87
Non-Cytoplasmic	274	308	0.97
Transmembrane Helix	309	329	0.89
Cytoplasmic	330	339	0.83
Transmembrane Helix	340	361	0.92
Non-Cytoplasmic	362	367	0.75
Transmembrane Helix	368	388	0.91
Cytoplasmic	389	395	0.94