YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39596933, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLRPASVYR YLLLGIGVFL GVYMIYSIIG YDDGSHVPIR PQRHLYLTVS QDRIGSRFGN  60
   61 LAPKRILYWT TVFGSTVPHT MLSDCPGLTD RCVIDTNRHQ LSSADAVVFH AADISKFPLP 120
  121 NTRKENQVFV FNSMETPDNS GRFAVPESFF NWTSTHLHSS DAIHKYGSFL ISTQVAESRG 180
  181 FKVQSYYVQP KRFVKTKSGV FGLISNCHTT SKRELALQEL GKHINVTIAG KCTSDERLKT 240
  241 ICPPGVECLD IFEQYPFYIA IENTICNDYV TEKIWNRISV PSIPIVMKRR IYKNILPPNS 300
  301 FIAMDDYKNP TEMANHLRAL ESNLTAYSEY FNWRQKGTWT SAPWNSPGYR NGVCRVCELL 360
  361 WKTKDNGTES TKSYENIWKW FDDESQCEKD EFVRGWLSG

Type	Start	End	Confidence
Cytoplasmic	1	7	0.96
Transmembrane Helix	8	30	0.89
Non-Cytoplasmic	31	399	0.97