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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11992991
Protein type: Transmembrane
Type Confidence: 0.76
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTRTHARVR SVCTMGVVSR AAAASWPLAS RARDSGALWG GLGNDGEAGN RFPVTFSLSG  60
   61 ETNGKPQTHH CSRPIDHRET RRGNGGVSGF FVFLFLFFFS PLSATAGPTQ SGNLLPYTGG 120
  121 PWENSRRPED GHRAFSLASS QPSFFGPPAA SSGPSHVGNP HGSDLVPPSS LSPSSSVVSS 180
  181 FAVSSPVSAH GLRKRRPMLP FSRSRRSMTF LSGPPISASP SSVSSSARFP SRSCSSLSLH 240
  241 REARDSPRCH GVSCSVFESP ELRHATFLSH PVPHSPLSSP ATPASFSSRS APGNQSAIQA 300
  301 STTESRVGER EGEATPTRVG DGEGDPLADY VRKHGGKRVI RRVLIANNGM AATKSIFSMR 360
  361 QWAYMELGDD KLLEFVVMAT PEDMRANPEF IRRADKIVEV PGGPNRNNYA NVDLICQIAV 420
  421 QEKVDAVWPG WGHASENPNL PRRLSELGIT FIGPSATVMA ALGDKIAANI LAQTAGVPSI 480
  481 PWSGDSLKAT LDSTGAIPRD IFDQATVKSV EECEKVADRI GYPMMIKASE GGGGKGIRMV 540
  541 DRKEQVRGAY EQVVAEVPGS PVFMMQLCTA ARHIEVQIVG DEDGQAVALS GRDCSTQRRF 600
  601 QKIFEEAPPT TVVPPHTMKE MEKAAQRLTQ SLGYVGAGTV EYLYNRKDDK FFFLELNPRL 660
  661 QVEHPVSEGV TGVNLPAAQL QVAMGIPLWR IPDIRRFFGR DPNAGDRIDF INEDYLPIQR 720
  721 HVLASRVTAE NPDEGFKPTS GRVDRLEFQP LENVWGYFSV GASGGVHEYA DSQFGHIFAT 780
  781 GKNREEARKK LVLGLKRVDV RGEIRTPIEY LVQLLEDKDF IENRIDTSWL DKLIKQRKRL 840
  841 GEKKVEKAHV VLAAVLFRAI RALKEKEQRV LSALQRGQRY IHDLASLNTV SQEVVYEDQR 900
  901 FSFEVSRTGP QLYVLKLNTQ EVECVVREQP DGSYIVLFPG EKSHKFNGRE EPLGLRLQVD 960
  961 GTTVLLPNVF DPSELRSDVT GKVVRYLVPD KGQVKKGEPY VEVEAMKMIM TLTAGETGVL1020
 1021 SHTKSPGSVV NTGDVLGTLA LEDPSRVKKI VDFSGLLDLP RVKKREAADA REKQTEGAGA1080
 1081 TFSLFGSPED EAAMRLRLAM EGYEQDVEST VQKLAFPSVD SRNLQTKKEK LTELLVELFQ1140
 1141 SFLSVDEHFA SVQGGEVAVD GPAAEKKVQD PATLLKLKLA HSRLQPRIQL VLSLLRALQN1200
 1201 FPNFFPEWTM PVSLELCLTR LAALHGRAYG QIALEAIRLL RSFRVAPFEQ RVQRLKAELL1260
 1261 QLPSASSSKA GSASERETNV RRAERIARSG TASAGIDLLS HLFGDGSVSL KALEVAVRRH1320
 1321 YRGFPIDALH TELFEVETQD GSKKEIPVAF WSFRQGDLTG AEAPLRTGVM GAFQSLEEVQ1380
 1381 EVGDRLLARL RQFDEEKRKD EGLGESHRER EDTQEPRNVC LFALTTPMDF GTEEEKLKSR1440
 1441 MQGIIHSLQP SLRSADVRLA AVHVPQVNKS CRMFNFLASD GFDESRIRRD LCPTVPSLIE1500
 1501 LNRLQTSFDL TRLDALDPNT QAYLALPRLE PSAKGEVSPS SPSTGPGAAS AQGASSTSKK1560
 1561 PVSQAQAPQN VFVRRLIFEN EVKSDFSDLP RILLDLLDVL DRCASDPRVS ATASGRLFLH1620
 1621 IVSPLNLASA KAVTEHFHKM MKRFRSEHNE RLLRLRVDQI EVKMHLRKGG SGSDGEKRSS1680
 1681 REEGAEATGS QAKEKERLQV LRLSVSSHQG SWLHTKASED VPHVLTGDPI AQRSFVFDEG1740
 1741 EETDAEGFVA QASPAGSGAE GADGAKSRAT EKTGQREGDA APVVRREPPE AEGLLGRISV1800
 1801 GLKTLRGTQT SATGSAGAGE MPAASSSPPG RWEGGDRKKQ ELLSVSRREE NEFFRHEKDA1860
 1861 DPYPEVDRIA MARSAARRAG STYIFDFLGL MEIALLQSWQ THLKEKGEKD GGVGGWDEAV1920
 1921 PRDLFKAEAF KVSAQGTLYL DPDWRVADNK IGMVGFLITL KTPEYPSGRQ VVLLGNDITF1980
 1981 QGGSFGVPEH LFFTQVSRFS REQGLPRVYI ACNSGARIGL YENLKDKIKV EWNDASNPSL2040
 2041 GFKNLYLSAE DYAALPPGVV SGHFEEAVNG DQRRFVLDAI IGDPDKFIGV ENLRGSGTIA2100
 2101 GETSRAYDET FTLSYVTGRS VGIGAYIVRL AQRTIQMVRG PLLLTGYQAL NKLLGREVYA2160
 2161 SQDQLGGPEV MFRNGVSHLV VQNDQEGMKE VLRWLAYTPK TARDSVSSAE MFSSDPVERE2220
 2221 VAFTPTKAPY DVRHMLAGYT KEDGTFVSGF FDKNSFKEYL AGWGKSVVVG RARLGGIPFG2280
 2281 AIAVETRTTE ARVPADPSSP DSRESVIMHA GQVWFPDSAY KTAQAINDFN RGENLPLIIF2340
 2341 ANWRGFSGGT RDMFEEILKF GSQIVDALRT YKQPVFIYIP PHGELRGGSW VVVDPTINLQ2400
 2401 KMEMYADANA RGGVLEPPGI CEIKYRAADQ KALMHRVDDV LKELDKQLQD CQTASDAIDL2460
 2461 KEKIKRREAA LEPLYLSIAR FYADLHDRPE RMKARGVISS IVNWKNSRTF FYWRAKRRLL2520
 2521 QDDLEARILA ADARLDYTKA RAKIEDLLKS HGVDIAGDKA ACEF

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