YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157772174
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPSNWVLIV LVAVPSGLTN AFKIKRTAKD LESQLYEDLL FDYNKVPRPV KNSSDILTVD  60
   61 VGASLIRIID VDEKNQVLTT NLWLEMKWND AKLTWTPEKY GGLKTLHIPS EFIWTPDLVL 120
  121 YNNAAGDPDI TILTDALVTF EGNVYWQPPA IYKSFCPIDV TWFPYDSQKC EMKFGTWTYT 180
  181 GRYVDLKQLP QEEVVTITKD GSDVEFMQQG MDLSFFYRSA EWDLLSLTSE RHSVLYASCC 240
  241 GPEKYVDITY YFGLRRKTLF FTCNLIIPCF LISILTTFVF YLSDHKITFS ISILVTLTVF 300
  301 FLVLIDLMPP TSLVIPMFGR YLITTMILVA LSTVVSVITV NFRFRSGSAH KMSPWIRAVF 360
  361 LKFLPKILMM SRPEKGEVTK QPPLVDAASL VGSNYATAAK AANEYRNKAK AKNNDAMSLR 420
  421 GKPSSQAVLN NTFDMRMRNN DSNVENRLKP YLCAQNNNAP TVAFRKTKRQ KSKTVDDVVF 480
  481 MNLLNQVRFI AEHFRHNELE GEISDDWTFV AMVLDRLFLI IFSVLNVGTV FIILESPSLY 540
  541 DYSKPMNITV PSKPLGQANF YSSWNLK

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	258	0.99
Transmembrane Helix	259	282	0.89
Cytoplasmic	283	288	0.82
Transmembrane Helix	289	308	0.92
Non-Cytoplasmic	309	320	0.76
Transmembrane Helix	321	342	0.94
Cytoplasmic	343	516	0.97
Transmembrane Helix	517	534	0.88
Non-Cytoplasmic	535	567	0.85