YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187026529, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRATELLHFL LATVSFAQDM SRDNKHVENG IFAIVGAELP HSEVPVPDYY HNPAELLLTS  60
   61 VLEAREDSEK RNSLETSREF PPPPTISTNS IETSSAEHES IVKAHRIDHS GENLIRYPMK 120
  121 LWLHGGMEEV IIFDFWRFSD LKGLFISCAI LFVLGAFYEA LKGLRLNLAD VKKWKRKDSF 180
  181 KLPTVVTVTD GRALRDDFKD LTSSVPLVTN PFRIVDNQEE KDAAKTYFQK PGCFSLVRIV 240
  241 QALVYMVQMA LAFALMLVVM TYNVWLILAT VLGAGIGHWM FPSKPSVV

Type	Start	End	Confidence
Signal Peptide	1	17	0.94
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	142	0.96
Transmembrane Helix	143	161	0.88
Cytoplasmic	162	236	0.89
Transmembrane Helix	237	257	0.74
Non-Cytoplasmic	258	261	0.50
Transmembrane Helix	262	282	0.83
Cytoplasmic	283	288	0.66