YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39596238, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCRREDGEI AATKTASQKS QARLFSTSSS CFGAARTTLR PSYGMGMWRV VVLLACLSAT  60
   61 QAALFTEGGA VQNGPAANRE RDVPDLSTEQ QQDVYKQIME ESAKEEQRNL DEALREQYRS 120
  121 VYDPVEARRN QELYDYYADM AMKLQEEQNG QKDALKSTFS RHGTKNSREG SKRSLEDAKP 180
  181 KPAEEPFDLE DLLKGEMMLE EEIAKEADFK KTQDELAKNT EAAKVNVESL ESAMQTATGE 240
  241 PQVPQKKGQN EFVSFVEPEP QPAKQTVSAQ LVDKRRLATS AEYSGNAPRY SSSSLLLLAV 300
  301 GTVMCVGLVG TVAGGTYYYK NNRRSDTPDD GEYAPYAGTG PGFRKNKGNK GDETLAYKAQ 360
  361 LHQYQQAKQK IICGEDAPGI IESDGEDGAD EENNYSVYEC PGLAPTGDIE VCNPNFAGQP 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	44	0.58
Transmembrane Helix	45	65	0.55
Non-Cytoplasmic	66	294	0.87
Transmembrane Helix	295	318	0.83
Cytoplasmic	319	420	0.79