YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39596215, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKEVPPHF QRSCQRWHML ALDHFQVIDQ PQKLYMYPPA GYPIAPIGAF PIPMPPNIYP  60
   61 TPPGGFRMPP QTPPEIPPPP IAPPAAYGGG AGVWPWWVWL LIILLLLLLL CCLLALCFAA 120
  121 FMKRRKEKKT TTVTVVDGKD CAVGTDQVQT TCVGTDTQEM VKVQPAMILG ADHLEQHHHH 180
  181 QNQQQSQYSR NQAEYDQGSV MAGGSYSLRE GMIHEGYTRT LPRDVYAAND RYASRDRFER 240
  241 HSQDKFTDRS SYRNFAYERD MGKVEPMDGF DEVETRERTY CLSDDDQEIV EKNIKRTHTT 300
  301 RYVTESREYE PEHDNEERMR GDEYHHASYT HSLPPTHKSS SSILQVLPEN LQKT

Type	Start	End	Confidence
Cytoplasmic	1	33	0.91
Transmembrane Helix	34	55	0.75
Non-Cytoplasmic	56	96	0.92
Transmembrane Helix	97	120	0.94
Cytoplasmic	121	354	0.99