YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157766498
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSFILTFT ISVVAAFDDE CVKCDLRSSY CKTWENMTRS CECRDGFARI SNGSCAMVSD  60
   61 LARGGMGMPP DSEEDEPFCV LGQAEKAATR ILTELLSKYD RNLVPKMKGV DVDVELLIQR 120
  121 VSEISEIQSS STMHILFSQI WHDPGLSFEH EEGAHCLTNL SLSHRMVDNI WLPNVCIVNS 180
  181 KGSAIHKSPT PNIFLAIFPN GTVWMNYRVV VESPCEMDFS FFPMDRVMCT TIFESYAFNV 240
  241 GKVRLHWKRQ GQPVEFIDDV KLPDFHMTKF VHEKATFIYP AGVWDQLNIK LLFRRSYGFY 300
  301 ILQIYLPTYC MVLISWISFW LDRRSLPARV TLGVSSLMAL TLQYSNVSRS LPKVSYVKGL 360
  361 DLFMFGCIVY IFLSIVELAV VGSLEQRKQQ RTNGDGDFLS DDDIKKNIFQ RTFSTKSFKS 420
  421 GYVSLILSPL SFCSFFAPTP FFSGARHHQF SECASPEDGG EWPKTRTEWA ERTYVECPEP 480
  481 EPPESNRHPE VENDSNNKML VLVRQRRASR KRRKRLMSGK LFQRWTAEDM DRFCQKLFPI 540
  541 TFTFCNLIYW MYYTAKSKD

Type	Start	End	Confidence
Signal Peptide	1	16	0.88
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	296	0.97
Transmembrane Helix	297	320	0.89
Cytoplasmic	321	325	0.88
Transmembrane Helix	326	345	0.84
Non-Cytoplasmic	346	361	0.77
Transmembrane Helix	362	381	0.96
Cytoplasmic	382	420	0.87
Transmembrane Helix	421	442	0.78
Non-Cytoplasmic	443	559	0.80