YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCS1_CAEBR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGMIAMLPA PLQQLSSHID FQGQKVAERT YQVILTLAGI IGFFVGYSTQ QLSYAMYTVM  60
   61 GAAVFTALII LPPWPFLFRK NPIVWQTPIE EQEASSSSDN EKKDKKKETK KTK

Type	Start	End	Confidence
Cytoplasmic	1	29	0.94
Transmembrane Helix	30	49	0.89
Non-Cytoplasmic	50	54	0.77
Transmembrane Helix	55	78	0.88
Cytoplasmic	79	113	0.96