YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157747393
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	128	0.74
Transmembrane Helix	129	147	0.36
Non-Cytoplasmic	148	176	0.54
Transmembrane Helix	177	197	0.81
Cytoplasmic	198	205	0.46
Transmembrane Helix	206	229	0.59
Non-Cytoplasmic	230	244	0.71
Transmembrane Helix	245	270	0.84
Cytoplasmic	271	279	0.65
Transmembrane Helix	280	299	0.74
Non-Cytoplasmic	300	303	0.54
Transmembrane Helix	304	322	0.78
Cytoplasmic	323	334	0.51
Transmembrane Helix	335	362	0.72
Non-Cytoplasmic	363	421	0.60
Transmembrane Helix	422	445	0.87
Cytoplasmic	446	526	0.60
Transmembrane Helix	527	550	0.91
Non-Cytoplasmic	551	566	0.59
Transmembrane Helix	567	588	0.86
Cytoplasmic	589	593	0.38
Transmembrane Helix	594	610	0.47
Non-Cytoplasmic	611	622	0.72
Transmembrane Helix	623	642	0.77
Cytoplasmic	643	649	0.92
Transmembrane Helix	650	670	0.95
Non-Cytoplasmic	671	673	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRHTHTVKR GENRAVAEEE ITELELQMVT YEEKALENNE YTGFKFPQIL HFPVPNKVVE  60
   61 MEAIDENPFS SKKSAFFMKR RIGRPEPEDE EEERQDESSD DSESGTEEEK RDQQDWHFWE 120
  121 CFYFAFRQLL FSRTWILLLQ FAAANYFGDR LRTDGFNLAD RIIVKKTLTT LKFQSRASPF 180
  181 LVILSFVVRY LVYVAGMPNS SFSLRITTTS LNILLRSFLV IQNIFRIGIH EYMKGSLGWS 240
  241 FPPWVITGIL SVAVNLFFFH AAGLALFMAV TMMTRNVKQA LLAVSIFAYN PASIFFTSAY 300
  301 SESLFFALTI TGFNFMLYAV RATSYSQRVI GTLSGTVIFG LSAVVRSNGL LNVIFVVWYW 360
  361 AAILLWEPEK PVPDCHLMIE SLAGSKNDRY RREGQARLRA FERKRKQTRK VFRWTDPRFS 420
  421 RCSLVFITLV FIVIVSIASF GPYVFMSNSA AEEFCEATPR QKELVATVKK QIRMSPKIIT 480
  481 IADAWEKAAW CRKPKLFGIV RQYYGEIQAK YWNVGLFGYW RIKKIPCFLM MLPAAILTVL 540
  541 AIISAWVHVF ETKRWNNIWV LLIRSDHLLH LAPQAIIMLC TAVFVINAEV FTRLIFSSSP 600
  601 LLYIFIAQYI DKLTQGNTMG NRLWHYTSSP GILPFFVFRR VWEEGWKGKA LYIYILGYFI 660
  661 FGTMAHAAWL PFT