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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|187036202, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRKNEPTW VTKPLLKRSH SSDSSIDEST VKLTNYGLFS YTRGKDLILL IVGTIAAVIH  60
   61 GAGFPLLAIV LGGMTTVFLR AQNSDFVVGV GNVNPNGLEP ISIDEFNSEV VKYCIYYLIL 120
  121 GVAMFVTSYV QIACFESYAE NLVHKLRQNY LKAILRQQIQ WFDKQQTGNL TARLTDDLER 180
  181 VREGLGDKFA LLVQMFAAFL AGYGVGFFYS WSMTLVMMGF APLIVLSGAK MSKSMATRTK 240
  241 VEQETYAVAG AIAEETFSSI RTVHSLNGHK RELDRFWNAL ENGRKTGIVK YCYMGIGVGF 300
  301 SNLCMYSSYA LAFWYGSTLI INDPTFDRGL IFTVFFAVLS GSTSLGGALP HLASFGTARG 360
  361 AAYTVLRVIN SHPKIDPYSL EGLLVDNMKG DISFQNVHFR YPSRKDIPVL KGISLEVKSG 420
  421 EKIALVGSSG CGKSTIVNLL QRFYDPTKGK VSIDGVDLKE INVHSLREQI GIVSQEPVLF 480
  481 DGTIYENIKM GNEHATHDQV VEACKMANAN DFIKRLPDGY GTRVGEKGVQ LSGGQKQRIA 540
  541 IARALVKNPK ILLLDEATSA LDTEAEREVQ AALDQAQAGR TTLIVAHRLS TIRNVDKIFV 600
  601 FKAGNIVETG SHEELMNKQG VFYDMTQAQV VRQQQQEAGK DIEDTISESA HSHLSRKSST 660
  661 RSAISMATSI HQLAEEVEEC KAPPTPISKI FNFNRDKIWW FIGGMFGAFI FGSVTPVFAL 720
  721 VYAEIFNVYS EPVEQMQSDV YFWCGMFVLM GITFFIGFFI SANCLGRCGE SLTMKLRFEA 780
  781 FKNLMRQDIA FYDDLRHGTG KLCTRFATDA PNVRYVFTRL PVVLASIVTI LGALGIGFYY 840
  841 GWQLALILVV MVPLLVMGGY FEMQMRFGKQ IRDTQLLEEA GKVASQAVEH IRTVHSLNRQ 900
  901 EQFHFTYCEY LREPFNTNLK HAHTYGAVFA FSQSLIFFMY AVAFYLGSIF VNQHSMQPID 960
  961 VYRVFFAISF CGQMIGNTTS FIPDVVKARL AASLLFYLIE HPTPIDSLSE AGIVKPITGN1020
 1021 ISIRNIFFNY PTRKETKVLQ GFTIDIKPGQ TVALVGHSGC GKSTIMGLLE RFYNQDKGMI1080
 1081 MIDGDNIRNL NISSLRQQVC IVSQEPTLFD CTIGENICYG TNRNVTYQEI VEAAKMANIH1140
 1141 NFILGLPDGY DTHVGEKGTQ LSGGQKQRIA IARALVRSPS VLLLDEATSA LDTESEKIVQ1200
 1201 EALDAAKQGR TCLVIAHRLS TIQNSDVIAI VSEGKIVDKG THDELMRKSE IYQKLCETQR1260
 1261 IVESQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle