YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39595234, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.70
Transmembrane Helix	21	43	0.82
Non-Cytoplasmic	44	138	0.71
Transmembrane Helix	139	158	0.69
Cytoplasmic	159	166	0.84
Transmembrane Helix	167	185	0.95
Non-Cytoplasmic	186	191	0.83
Transmembrane Helix	192	213	0.93
Cytoplasmic	214	222	0.82
Transmembrane Helix	223	246	0.90
Non-Cytoplasmic	247	251	0.79
Transmembrane Helix	252	271	0.92
Cytoplasmic	272	343	0.97
Transmembrane Helix	344	364	0.89
Non-Cytoplasmic	365	371	0.85
Transmembrane Helix	372	393	0.86
Cytoplasmic	394	399	0.87
Transmembrane Helix	400	419	0.95
Non-Cytoplasmic	420	426	0.74
Transmembrane Helix	427	449	0.88
Cytoplasmic	450	458	0.71
Transmembrane Helix	459	480	0.91
Non-Cytoplasmic	481	487	0.77
Transmembrane Helix	488	508	0.96
Cytoplasmic	509	568	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAKPPDFD YVLEQVGDYG TYQLVFFFII CLPASLPSAF SAFNIPFVVG NPPHSCRIPE  60
   61 GKEYLRPLTN DTQILSCKQY NETQINVFQA FTSAPVDTYS DRIDLVPCQN GWDYDNSTYL 120
  121 DSLVTEFNLV CDQQSWVEIS TTSFYVGSFI GNCLFGYIAD KFGRRRSFFV ILIVLVVCGT 180
  181 ANSFAKDIES FIILRFFTGL AFPALFQIPF IICMEFMGNS GRIFSGLMIS LFFGAAMALL 240
  241 GVVAMFIRRW RPLTFFCNAP FAVLFCYYFF LPESPRWSVS VGKWAEAKAQ LKKIAKMNGK 300
  301 SDVDVNELVD SLKNHQNAAE EEETKRSHNV TDLFKTPNLR KKTFIVTYIW VMNAIIYNGL 360
  361 TLNVSNLPVD DYWSFIINGA VELPGYFVVW PLLQCAGRRW TLAATMIVCG IGCVSAMFVP 420
  421 DGYPWLVASA SFIGKFGVGS GFAVIYIFAG ELYPTVVRAI GMGMSSMVAG SGLLLAPHIV 480
  481 NLGKIVKILP LLIMGLMALS AGILTFFLPE TLGAPLPMTI EDAENFGKKP DADSGMFTQA 540
  541 AKKRESQPLL EPFTPMERRR RSSRLMNI