YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157745819
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAQTVPHNS ASSNKPGTAG SRVPRMVFAE IVGTLSFLQP QADDDIFDRL HYYYTTTFLL  60
   61 LTAVLISLKM FGGRPIECWL PAEYKSSWED YTEMYCWARN TYVTAFEDDN LPEVVNREYT 120
  121 MVSYYQWVPF FLVYVAFSFY APCLLWRLFY DKSGIRLKDI MAFANDKANV VPAQRQANIR 180
  181 GLSAHLSSVF KHRFRIGEKH PYHHKVFKIF NVRYYESYLT YLYLGIKGMF LMNVLMQMYF 240
  241 MSRFLELDSH RYYGYGILYD LIMGRGWKES SNFPVVTYCD MQIRILGHVQ RHTVQCVLVI 300
  301 NIFTEKIFFI LWLWYTLLSF ISFGSILSWI FGSIPFNQRR QFVARRLELA DVNFEKSRYK 360
  361 HELDEFVRDY IKIDGIFVLK MITIHSGILM CTDIVDQMWD QYLEESGNQV IREIIDEKSF 420
  421 GDDYDRSASA GGLSIDPGIR RKTSVLVPLM SREDLNVDQS PTTPTPQFLR PPSSRMTANV 480
  481

Type	Start	End	Confidence
Cytoplasmic	1	49	0.86
Transmembrane Helix	50	72	0.85
Non-Cytoplasmic	73	129	0.83
Transmembrane Helix	130	150	0.91
Cytoplasmic	151	218	0.86
Transmembrane Helix	219	240	0.65
Non-Cytoplasmic	241	310	0.56
Transmembrane Helix	311	336	0.84
Cytoplasmic	337	480	0.57