YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45501164
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVHRCINRMS SKHIGSPPPY DYEENGYNVA PQPAYSYYPD DEFQHFYRWT SPPGIIKIMC  60
   61 VLSIIFCVGI FVCVASTLAW DTNAGAAGFG TNGGYYGGSY GGSYGSGFGG TGYGMGGAGS 120
  121 FGYGILGSQN DPRQGKGFMI AMAIITFIAL MVIFIMVISH QRVSQGRKFY LSVIIVSALL 180
  181 AFFMFVATIV YLVTVYPMAQ TSGSVQFNQV YSMCAAYQNP QMSGGFVNQY LYHYCVVDPQ 240
  241 EAIALVLDFV VIAALIIIMV FAIKTRQRIN NYGKDNILWR KVKEFDDQNS PQDVEDWVNN 300
  301 VNGAPEGLLA DYPVKFGSRN NLDDNSTSYD KPPLSESPVE ILPVRNSVPI SSGSEMNSSV 360
  361 GRPKKRRAGR PRTADGRDYD ADYASSGDEL DDDDFFSEFP PIVNTQERDD YKHLFDQDHQ 420
  421 EYKDLQAEMD QINKRLAEVD RELDGLKEGS PQFLDAMDEY NAIQDQKRSG EYKQKKKRCK 480
  481 YLKAKLNHIK KMVSDYDRRS

Type	Start	End	Confidence
Cytoplasmic	1	54	0.85
Transmembrane Helix	55	80	0.87
Non-Cytoplasmic	81	136	0.47
Transmembrane Helix	137	159	0.92
Cytoplasmic	160	168	0.47
Transmembrane Helix	169	195	0.86
Non-Cytoplasmic	196	241	0.57
Transmembrane Helix	242	263	0.92
Cytoplasmic	264	500	0.76