YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39595035, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGSQILSLIK SFSVYFCISH LFFSSSRLQY WSNKRHRSSG QTKWAWRTAA HRKKKSLLKR  60
   61 RSEGPEGSLH TFAHSSISHL IRYLIPATLI LLLISVTSQL LMFDKVEDDH PCLLSMCDQD 120
  121 SGCVPLGCSV DQFERIGCGY FRLNIYQFQQ CYQPGKKDEE TENEAWMNCA QDYQCSASCI 180
  181 RTLASKFRVK CYGKSDCETI ARIHDGGANG CRDRGTIGYW KRVRDSCGPE CNKPIFTRHF 240
  241 Y

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.50
Transmembrane Helix	8	31	0.56
Cytoplasmic	32	79	0.56
Transmembrane Helix	80	101	0.64
Non-Cytoplasmic	102	241	0.73