YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157758211
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGYYLFLQL GCAFGLLAVT AFFGFIPLWL LEFLRKKGKD QSESGWLSYL SCFSGGVFMA  60
   61 TCFLDVIPHV SENYQKMIED YGVEYPVPLF QVFICCGFFF VYFIEEITGL IFGAGEHGHS 120
  121 HGHGHSHAGP IHVDNKEEKV TNLVVEEAAP WVVSDEKSNF LKSLTFAAAM SFHSLLEGFA 180
  181 LGVQDSQTAI ITLFLSLLLH KSIESFSVGL QISRSNSNKK KTVIFTILVY AFMTPLGSVL 240
  241 GSVLQNVGGP SFTKQFVIVL LESAAAGTFI YVTFLEILAA EKNNRFNSLK QLAAILFGFI 300
  301 LILMLQILFG HEAHGHAHGD PASSDHGPSI NPIPSVSSFL VSSPAI

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.89
Transmembrane Helix	7	31	0.88
Cytoplasmic	32	45	0.90
Transmembrane Helix	46	67	0.94
Non-Cytoplasmic	68	86	0.85
Transmembrane Helix	87	104	0.92
Cytoplasmic	105	159	0.90
Transmembrane Helix	160	181	0.58
Non-Cytoplasmic	182	187	0.49
Transmembrane Helix	188	203	0.64
Cytoplasmic	204	222	0.81
Transmembrane Helix	223	244	0.93
Non-Cytoplasmic	245	255	0.82
Transmembrane Helix	256	275	0.94
Cytoplasmic	276	291	0.76
Transmembrane Helix	292	310	0.95
Non-Cytoplasmic	311	346	0.91