YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39594894, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLSGLTQIL YGLIMTGSAI LTAVALFTPG WNTIENNVKD VTNGGKPDWN GLMPWSCISH  60
   61 SQGSTCSDWW AELPGWMRCV VICMILSLIV QIVAIIYNLL TCLACCCKKY IIHPLTLFAV 120
  121 VSTILLLITV IVYAANWSEF QNGFNTSSQL GYSFWLAVGA LILSAADVIL GALAVFLGEN 180
  181 CC

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	28	0.95
Non-Cytoplasmic	29	77	0.94
Transmembrane Helix	78	100	0.92
Cytoplasmic	101	111	0.81
Transmembrane Helix	112	135	0.90
Non-Cytoplasmic	136	153	0.92
Transmembrane Helix	154	177	0.93
Cytoplasmic	178	182	0.91