YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187024563, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	36	0.94
Non-Cytoplasmic	37	53	0.93
Transmembrane Helix	54	77	0.86
Cytoplasmic	78	147	0.92
Transmembrane Helix	148	182	0.56
Non-Cytoplasmic	183	195	0.81
Transmembrane Helix	196	218	0.92
Cytoplasmic	219	230	0.90
Transmembrane Helix	231	253	0.90
Non-Cytoplasmic	254	268	0.87
Transmembrane Helix	269	288	0.95
Cytoplasmic	289	376	0.89
Transmembrane Helix	377	391	0.42
Non-Cytoplasmic	392	407	0.46
Transmembrane Helix	408	429	0.86
Cytoplasmic	430	439	0.52
Transmembrane Helix	440	464	0.66
Non-Cytoplasmic	465	465	0.34
Transmembrane Helix	466	482	0.72
Cytoplasmic	483	496	0.72
Transmembrane Helix	497	519	0.93
Non-Cytoplasmic	520	523	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDILIQYAP NWTEHTTWLV IVAFVFAFFV SYGMGANDSC NDWGPAVGAG TVKLYQAYIL  60
   61 SGILNVAGAV LLGYKVVETL RTGIIEFNIF DVYAQYNATT NQYDTVDHCG NATLVGGWKS 120
  121 PDIMPGAPPV ECAKYTSIDF MLTQTASLAG VAAFMILSSC YKIPVSATHA VVGASVATSF 180
  181 YIRGNVGIKW GEIISIVISW FISPVIAGII AGGMYYIIKY SVLIRQDTFK WALRLCPVFM 240
  241 CFTLVVNLYA CIYDGSKYLG LDKLNATEAF LISVAIGVAG WALLTFPLKN WLPNRAKRLY 300
  301 DKETIKMQKR LEAGKAPKSH KIKDMREPEV AENIKELPWY KYFWAYVPED RLTKKVFNTL 360
  361 QIVSSSMLSF THGANDTGNT ISPLLAIWLC YESGYAFGNA ETRDDTQLLL GYGSLAMIVG 420
  421 FVTLGHRTIK LLAHEMTVDM SPISGFCIEV GTAFTVLICV KLGIPISSTH CTVGAVVFVG 480
  481 MAKSTSEGVS FGTFRKICFF WFLCFPMSAA IGIGTTIILQ QFL