YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39594575, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDEQTQKLL DLANGQRPPG SRLVIEQGSF ASRLWWVVKA PFRTLMCLSL VTVFFATYFG  60
   61 FMLPVMWART VWPRLYWFVE GKLYRWLQSF IAYWGYTAGY DVYEYGDDVT TYYRDERVLM 120
  121 MCNHQSTADV PTLMTVLQNK GVASRKTLWL MDVMFRWTPF GIIGNNHGDY FIQQGKATRD 180
  181 KELVRLKKHL HDVFWDRDRR WVILFPEGGF YYKRVESSQS YGKKNGFPHL LYTTLPRMGA 240
  241 VKAILEEVGP RTVDEDEPRE RSNSKMKLLK DTVGAIREKK YVKDTRPPIK YVLDVTIAYP 300
  301 NGIPLSLATF GLGTREKCDI AVNYKIYDAA EVPFEDEEKL RDWMYEVYKE KDEMLARYYA 360
  361 TGEFNPGEKG TRIAFSWAKI IGMYGFWFGS FYAQYNVYSY LITGLVKFLL FPFSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.39
Transmembrane Helix	42	68	0.82
Cytoplasmic	69	379	0.57
Transmembrane Helix	380	395	0.55
Non-Cytoplasmic	396	415	0.68