YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157764460
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.73
Transmembrane Helix	26	47	0.92
Non-Cytoplasmic	48	64	0.66
Transmembrane Helix	65	87	0.82
Cytoplasmic	88	107	0.71
Transmembrane Helix	108	130	0.89
Non-Cytoplasmic	131	163	0.66
Transmembrane Helix	164	186	0.90
Cytoplasmic	187	200	0.81
Transmembrane Helix	201	221	0.89
Non-Cytoplasmic	222	231	0.80
Transmembrane Helix	232	255	0.90
Cytoplasmic	256	329	0.92
Transmembrane Helix	330	349	0.75
Non-Cytoplasmic	350	375	0.67
Transmembrane Helix	376	398	0.88
Cytoplasmic	399	410	0.60
Transmembrane Helix	411	430	0.49
Non-Cytoplasmic	431	432	0.41
Transmembrane Helix	433	456	0.66
Cytoplasmic	457	466	0.62
Transmembrane Helix	467	489	0.92
Non-Cytoplasmic	490	494	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTNAILAD ITTTISGVIG DFDQSSVLWA LIVGIILAFL LGAGMGANDV SNAFGTSVGS  60
   61 GVVTIIQAYI MASIFETLGS VLVGWSVTDT MRKGVVDTTQ YANDPKELLL GQVAILGGCA 120
  121 AWLMIATVFH MPVSTTHSLV GATVGFSIVL RGFDGIQWMA IVKIVASWFI SPILSGTISC 180
  181 IIYIIVDHTV LRTANPVKSG LRALPVFYFV CLAFNALMIF WDGSKLLKFD QIPSWGIVII 240
  241 VLGVGFLAAA FAHFVMKPRI QAKIQDSEVP PTPPCFSDME SGRGSAELKE IKNGDEQIQP 300
  301 KPEQAPGKVR KFFNWLLPDR SRVDSRSTTQ LFSTIQVFTA CFAGFAHGAQ DVSNAVAPLA 360
  361 ALISIYRYKS VEQKEVVPIY VLLYGVFAIC VGLWVLGHRV IKTVGQKMSE INPASGFTIE 420
  421 FGAAMTSLLA SKIGLPISTT HCLVGSVVAV GSIRSGEGIK WSIFRNIVIS WVVTLPVAGA 480
  481 ISAGIMLVLK WIAL