YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187024226, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLNEPPVL GAGQPIGTRL KGWFFAAAML LSAFFGVLYI VTPLVVLLFV KPPLWRKMLD  60
   61 RLVGIWAIMP GALCNYIFGA NIRIKGDFIK HDEASLIIMN HRTRLDWLFF WNALYKMDPW 120
  121 LCTSEKISLK GMLKYVPGAG WAMQAASYIF LDRSFDTDKT KLDNILNYYA ETENKYQLLL 180
  181 FPEGTDKCPK ATERSRVFAE KKGHVHYQYV LHPRVTGFVH IVQAMRRANN IDYIYDVTIG 240
  241 FGDAIVQSEV DIASHGVCPK EIFYQVVKYP INRIPQSDEA LGQWLINLWR DKEEKLRRFY 300
  301 EMPRNVRQFP DTPDGMEYEL DNNTDMAQKW LIGFWCFTTC FWMFMFFQSA IMFYWAIIAC 360
  361 IFYAAVHKIY GGLEFLAIDR FNHSKQYGAV SQDPEVLNT

Type	Start	End	Confidence
Cytoplasmic	1	21	0.87
Transmembrane Helix	22	46	0.86
Non-Cytoplasmic	47	61	0.78
Transmembrane Helix	62	80	0.92
Cytoplasmic	81	329	0.93
Transmembrane Helix	330	346	0.84
Non-Cytoplasmic	347	350	0.56
Transmembrane Helix	351	371	0.82
Cytoplasmic	372	399	0.71