YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187024225, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLKGVAFI VLVFFSSLLG TVFLLFPLIP LAWIAPKLWR LAADRLVGFW LTFPCALIEW  60
   61 VFGVKFRVTG DLIDRDEPAI LIMNHRTRLD WLFSWNALFK MDPWLLTSEK ISLKAPLKMI 120
  121 PGAGWAMSSG CYIFLDRNFE KDKPILERIV KYYSQSGNKY QILLFAEGTD KGERATQLSH 180
  181 AFADKNGLPR YEYVLHPRTT GFRFLMDMMK KENYIKNVYD LTIAYSGTIV DTEKKLLGGN 240
  241 FPDKVHLDVK KYKLDDIPEG DGCEKWLTNL WETKEKRLKK FYEKEERLEA SGDRFEWPET 300
  301 TSGIGYFVCF SFWVVASLFW IGAIYSLLWV KIYVTCAIVF YIASLRFYNG AEFVFLNWFE 360
  361 ARSNRHDQER SKTE

Type	Start	End	Confidence
Cytoplasmic	1	7	0.81
Transmembrane Helix	8	31	0.89
Non-Cytoplasmic	32	45	0.70
Transmembrane Helix	46	64	0.88
Cytoplasmic	65	302	0.88
Transmembrane Helix	303	324	0.91
Non-Cytoplasmic	325	328	0.68
Transmembrane Helix	329	350	0.81
Cytoplasmic	351	374	0.80