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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|187026190, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQHSKTKK TPGREDYIYS HDIPKNEKNG GEKFHGSPTK SNNFNQSKDD ETMKAKMMDF  60
   61 CDKTTAHGAK RVLIARNSFS KLMWGLIIFS FLLMFAYQAS KLILKFNAHE KITDISLKFD 120
  121 DVEFPAITFC NLNPYKKSLV MMVPSIRDTM DVYDNAKTHS KTEGDKKKPK ISRKQHSDAS 180
  181 QQMVRKLFAE EIEEGMAELK KSNLTLQMSN QAARNLTARR RSQRSVENRR YEAIEAHCKC 240
  241 VGNIGMECIR FESPPRDPGS KCICTYDRDM EVAWPCFNIS VWYDHECPLC HDDGYCELSL 300
  301 PNGVTSSDKW PCMCRNRGDT TSRDDTPYCI GKAGTGKIEI RKLWLENNMT TTTTTTTTTP 360
  361 PPTTTTTTTT TTPPPTTEPR PNQRAIVSNP ETIKAMGFQG MTDGVAMLTR AKENLMFTMA 420
  421 ALSDKQRIAL SQSKHEFIEM CSFNGKECDI DEDFRLHVDP EFGNCFTFNY DVDNNYTSSR 480
  481 AGPMYGIRVL LFVNTSDYMS TSESSGVRLA IHPPTEYPFP DTFGYSAPVG FASSFGIKKK 540
  541 VMQRLPAPYG ECVETKKVTD GNYIYSGYDY HPEGCHRSCF QNGLIDDCSC GDPRFPVPEG 600
  601 YKHCSAFNAT ARACLERNIG SVGDFHHITE KMDKCVCKQS CEEIIHEVTF SCSKWPSGAT 660
  661 DLGDCEGMTE NECEQYYRLN AAMIEVFYEQ LNYELLQESE AYGLVNLIAD FGGHLGLWLG 720
  721 FSVITVMEVC VLLVDMISLF FKSRHEEKLL RESTRRKDIP EDKRQITIGT AKKNDALVSI 780
  781 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle