YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187026172, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTSWTWKIW STLGVILRIL FIDIPLDIYR FLNLQQKNVQ GQTVVITGGG SGLGRAMALD  60
   61 FAKRKAKVAI IDVNKEGGLE TVKFIAAEGN MAKFWFCDIS DVEGMKSTAK EIEDTFGDAD 120
  121 IVICNAAILS FTSFMEISNE LLRKCLDVNI FGTINTIRAF LPKMENRNDG HIVCVCSIAG 180
  181 WSGETMGLSY CTSKFAVRGA MESLQMELRD RGLEGIKTTT LYPYFARTPM ILENNMRPTC 240
  241 TWFPFMSVRS CSRRMVDSIL KEKVHAFVPS YITLIPFVKN FTSLQVTRSL RNYLGVKYLA 300
  301 SDPSLCKLRL IEMSDFFRSP PLFWWFVIVP ALAINYISYA NPEAALHIPL IGSIVHTIGT 360
  361 QFHFVTLLTN LFALAAHIGE ALYALYLCHK ANISFASTAK WVVQTFILGF PSLSILSRYK 420
  421 AKQRKTN

Type	Start	End	Confidence
Cytoplasmic	1	8	0.60
Transmembrane Helix	9	26	0.67
Non-Cytoplasmic	27	320	0.58
Transmembrane Helix	321	340	0.91
Cytoplasmic	341	353	0.51
Transmembrane Helix	354	379	0.71
Non-Cytoplasmic	380	397	0.60
Transmembrane Helix	398	417	0.77
Cytoplasmic	418	427	0.77