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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VSR1_PEA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCWRLSAIL FLGFMLTSLS TARFVVEKNS LSVTSPEKIK GKHDSAIGNF GIPQYGGSMA  60
   61 GNVVYPKDNS KGCKDFDSSF KSRPGALPTI LLLDRGSCFF ALKVWNAQKA GASAVLVADD 120
  121 IEEPLITMDT PEEDVSSAKY IENITIPSAL IGKSFGEKLK DAISGGDMVN VNLDWREAVP 180
  181 HPDDRVEYEL WTNSNDECGV KCDMLIEFLK DFKGAAQILE KGGYTQFTPH YITWYCPHAF 240
  241 TLSKQCKSQC INHGRYCAPD PEQDFNTGYD GKDVVVENLR QLCVFKVAKE TEKSWVWWDY 300
  301 VTDFQIRCPM KEKKYNKECA NSVIKSLGLD VEKIDKCMGD PNADTENSIL KEEQDAQIGK 360
  361 GTRGDVTILP TLVVNNRQYR GKLEKGAVLK AICSGFEETT DPAVCLSNDV ETNECLTNNG 420
  421 GCWQDKTANI AACKDTFRGR VCECPLVDGV QFKGDGYTTC EVSGHGRCKI NNGGCWHDAR 480
  481 NGHAFSACLD DGGVKCQCPA GFKGDGVKNC EDIDECKDKK ACQCPECSCK NTWGSYNCSC 540
  541 SGDLLYIKDQ DTCISKTASQ AKSTWAAFWV VLIALAMIAG GGFLVYKYRI RQYMDSEIRA 600
  601 IMAQYMPLDS QEEGPNHVNH QRG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle