YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157755605
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDNVVEAPN WPAPVAEVGE KTVFQRMFHF GTIFAFSTIT MIGAVTTFFS LQWMPVNSYI  60
   61 GLFNTLAFLL WNYLTIGNLF NASFFGPGYV PRGWKPENKE HEKKLQFCVP CNGFKVPRSH 120
  121 HCSKCNRCCM KMDHHCPWIN NCVGHRNHQY FLRFLFFSVV GCIHAVIIDG SAMYHAFFAG 180
  181 WYQRYGDGTE PIIFLTPISF VAVIFAFAMA CAVALALTFL FITQLRYVIR NKNGIEDYIH 240
  241 GKSLNMRKIL DEEDEEEVEW IRSLGEWKYP YDLGWKRNLS EVFIGIFDGR TKGNGTWWPV 300
  301 IKGCSQFTFT IDQLLQKQSK RGRARIVDIG EDFEGKCCSS RKFGWKIWMK QPIIDGKCLK 360
  361 VSEGETIIAT RGVSGWVYGF RESDTRNKGW FPIAITNLKR NGDPKTEQTA SSEEDVKTDD 420
  421 TLSSEEKKDQ

Type	Start	End	Confidence
Cytoplasmic	1	29	0.95
Transmembrane Helix	30	51	0.92
Non-Cytoplasmic	52	66	0.74
Transmembrane Helix	67	85	0.84
Cytoplasmic	86	153	0.94
Transmembrane Helix	154	176	0.89
Non-Cytoplasmic	177	197	0.88
Transmembrane Helix	198	222	0.91
Cytoplasmic	223	430	0.99