YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39593885, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVKSVLGDL QIVVERHSDV LRNNALPFRF LVVLRIIGFI VSYLHFARSL LWLHPYQLAS  60
   61 IELWRIATSA FCGHNLIDVL WSVWCLHFGT NLVRLNNTNE SLLKLYAITQ GITTLVIVVF 120
  121 AYLTYIFFDS IKFFYIEPLV GMTPVCAAVM VLMKQFLPDT IVLATPFGRI KYTHLPFLVI 180
  181 YVSFILALTK FIYFVSFLQI AIGVQVSWTY LRFYKPHETD EIYGDGSEHF TWASLFPSRT 240
  241 QLFFTLIGKV CFRSLARMGV CKRQVRHVDL NSLQSVAVGI NLPALENSAK DSERRRQKAL 300
  301 KELNERLNKT RTAEVANYGN WDDDENDEPS SVAVVSPPAS NVHSS

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	47	0.87
Non-Cytoplasmic	48	65	0.83
Transmembrane Helix	66	88	0.82
Cytoplasmic	89	104	0.81
Transmembrane Helix	105	126	0.93
Non-Cytoplasmic	127	133	0.81
Transmembrane Helix	134	157	0.85
Cytoplasmic	158	173	0.89
Transmembrane Helix	174	197	0.85
Non-Cytoplasmic	198	234	0.86
Transmembrane Helix	235	253	0.59
Cytoplasmic	254	345	0.71