YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187034532, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETTTEVPS TVANATVFTF EEQATSSLAL YGMSIFCIII GSIRSTQYIR RQIEKKRLIE  60
   61 GSITMREAKK FPISASCVLF GLYLFFKPAN ERFNWVASVA QKLRVPEEYV QKINATIINY 120
  121 TAVPETSTDP AESLLIRLAS KVPHQYVPEA IHAGAVWAYG QLPTLGKNEC MLLLTFLICF 180
  181 EGASSFASLI KPLVSAIVKR LPLIGFNAPY LLSLKKGKKE MEEGDIEEAK SKDTEYLCKF 240
  241 EFDRHDIISL LLCSPVLISH LYKRHWITNN IIGVSFSIVG IQHLHLSSFK AGSLLLCGLF 300
  301 LYDIFWVFGT DVMTSVAKGI DAPILLQFPQ DIYRNGPWEA NKYSMLGLGD IVIPGIFIAL 360
  361 LRRFDYRVVQ STAEAKAPQA SLKGRYYFSV TVIAYMAGLF ITMAVMHRFK AAQPALLYLV 420
  421 PCCLFVPLLL AAIRGEVSAL WNYDEGKHVD NEENRKRVDS GKKNN

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.95
Transmembrane Helix	27	48	0.91
Cytoplasmic	49	67	0.97
Transmembrane Helix	68	86	0.77
Non-Cytoplasmic	87	170	0.80
Transmembrane Helix	171	190	0.80
Cytoplasmic	191	285	0.77
Transmembrane Helix	286	306	0.66
Non-Cytoplasmic	307	342	0.74
Transmembrane Helix	343	364	0.81
Cytoplasmic	365	385	0.82
Transmembrane Helix	386	406	0.95
Non-Cytoplasmic	407	413	0.71
Transmembrane Helix	414	433	0.93
Cytoplasmic	434	465	0.86