YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187034555, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAEKQSFCR LICHINVRIA WTIFGIVFGI SAVLTYAIKF QNWSATATCA IATLFACETL  60
   61 YLYWALKKNT IVNWKTSTFQ LMIWPNIFIG LLGLIGCLVC YIIAGITHQG AGSIQAMYGE 120
  121 NLWFTGSWSL VITKWTWQNA FFARKYINKV GGGASEDGED DDDDDQVEEI KY

Type	Start	End	Confidence
Cytoplasmic	1	16	0.94
Transmembrane Helix	17	38	0.91
Non-Cytoplasmic	39	43	0.86
Transmembrane Helix	44	65	0.94
Cytoplasmic	66	82	0.94
Transmembrane Helix	83	105	0.92
Non-Cytoplasmic	106	118	0.74
Transmembrane Helix	119	137	0.80
Cytoplasmic	138	172	0.87