YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39593674, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSDSSSDSS DRSFKFPFDT NDALSIHELA VKNLPQPDAE NPFSVAMHSP PGSPPFAVDR  60
   61 KSVDNSVVAV TDTPFEFAPS QKSSQHTNRP PPILKSKEEK MTGNLVEKLK PKFVVENELI 120
  121 RAFIAELFCT AFLVFGGECV NAQYVLSQGK NNEWIGVSVG WGIALMLAVL MGSKISGAHL 180
  181 NPAVSFFQLT QGKMNVIRFL VYVVAQNIGA FIGAFGVFCV YFDAINAFEG GNRTVTGHTA 240
  241 TASIFATYPG PFLGTFNAIV DQIAGTLVLC LGVAAITDSR NEIPSFLQPA WIAGLLSFLG 300
  301 MSMALNAGYA INPARDFAPR LFSLCVGYGW EVFSYRNYKW FWIPIICPMI GGVLGAWIYE 360
  361 FFIGYHIPDE TLLEAEKEKQ LQDVLDEVAD IENQLPEYTD KKQLSDIASI HQETGFRDI

Type	Start	End	Confidence
Cytoplasmic	1	121	0.94
Transmembrane Helix	122	142	0.79
Non-Cytoplasmic	143	153	0.77
Transmembrane Helix	154	178	0.83
Cytoplasmic	179	198	0.82
Transmembrane Helix	199	222	0.89
Non-Cytoplasmic	223	257	0.81
Transmembrane Helix	258	277	0.89
Cytoplasmic	278	288	0.76
Transmembrane Helix	289	311	0.89
Non-Cytoplasmic	312	339	0.71
Transmembrane Helix	340	361	0.91
Cytoplasmic	362	419	0.70