YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39593650, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQAPAKEED FAWAYTEEPH ASRRKEMLAK YPQIKELFGQ DKAFRPVVVC MVLAQIVFAY  60
   61 LLRDSDWLLV VLQAYFVSGT INHSLTLAVH EVSHNQAFGT SRPLANRIFG FIANLPMCIP 120
  121 MSISFKKYHL EHHRNLGEDV IDTDVPTEFE AKVFRTWLGK MIWMSLQPLF YGIRPFMLYP 180
  181 KSMTDLELIN VAIELAFSSF IYTQFGPKSF FFLFGGLVLG MGLHPCAGHF VSEHYVFKKD 240
  241 QETYSYYGPI NMVVFNVGYH VEHHDFPYIT GSNLPKVREI APEYYKDWQT HGSWVGMMAD 300
  301 FIFNPKMTLR KRIKRKYAKP DQFSFYGTGP YETSHVYQSV ANVINTLTGF GGQKSVVKCD 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	42	0.91
Transmembrane Helix	43	62	0.80
Non-Cytoplasmic	63	103	0.52
Transmembrane Helix	104	125	0.74
Cytoplasmic	126	156	0.64
Transmembrane Helix	157	178	0.50
Non-Cytoplasmic	179	209	0.42
Transmembrane Helix	210	231	0.85
Cytoplasmic	232	360	0.61