YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39593577, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFSLEESA PKILGVSIAV IAAIYVIYPP GLLLIPLSLF IFAYTTKNEK CSSTDVETFF  60
   61 SGFKIGGHRG APKSFPENSM AGFAQAKADG ADLIEFDVAL TKDGKAVLMH DDDLDRTTDM 120
  121 TGPIRNKTRA ELDRCNISAT FIRTAPGDQS RLASVARERV PDMEDVVRWA VENNTRMLFD 180
  181 VKDSDNELVD QISNLFSKYN LYDKAIVCSF FPWVVYRIKR GDQKILTGLT WRLKFWSYHD 240
  241 IENIRPRYFG FKQMLFEIID VAHVWLLKRV TPWYLGADLL LTNNLDISQA LILDQKRRGM 300
  301 RVAVWTVNDM AEMHWMLKTL HIPILTDYPE LTKQAAHLEE LQKIDYMPMH KSHSDL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.84
Transmembrane Helix	13	32	0.87
Non-Cytoplasmic	33	356	0.92