YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187034732, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRNELLNYY LSSFLILSLS YASIHAEKDL LPQSTSSETF LTDEDFLRPL YDDETFLTEK  60
   61 DFKNGEKLGE DHVAAGSILW KQVYKKGDIR GKAAWKLDSK NSESLRRNGV ITGTRKWPNG 120
  121 RIPYVISNQY NDRERAVLAR SFQAYHDKTC VRFVPRTAVD NDYLYIGKID GCYSDVGRAG 180
  181 GRQELSLDNG CLQYDTAIHE LMHSVGFYHE HERWDRDEHI TILWHNIDRE AYDQFGKVDL 240
  241 AESSYYGQLY DYYSIMHYDS LAFSKNGFET MVAKAPEMTA VIGAAIDFSP DLPIQIDILK 300
  301 MNLMYQCSDV KLPATIVAST VPPAVVPAPA PGITVVEDDC RDRTNLCWRW IDRCKSFFFE 360
  361 QIMKEFCALS CGYCTPKTLQ TAKASPPNYS NTMLTKSSTS YLQHG

Type	Start	End	Confidence
Signal Peptide	1	26	0.89
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	405	0.99