YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157763166
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTFIILFI LSQLAFGGYQ DNTEFDEKIK EIIRTRANGD VSFLRRFVNA DGIPQGLGNR  60
   61 DGFNDSYCYN ITERLLAHSK YADCTKLQSL NGSVVDLNLW TGFDIFKFSV NLLELKNVDV 120
  121 EMTYRTELTY LYFSAFRKCD NCLFNFTRNP ALVGLRFWNL SHGNYLDTLS NEYRPKLLVR 180
  181 GNLRLKLSQG ADRRKIEDLK KVCNKEMCEI QKNEECHFRH SIKNSDEYSN CRHVYGDMYF 240
  241 NSRFQESQPG TMDFRIDGCF VFNRTGIQFL RPIMRAFSNC SRSHLFFKNK YMCTDQLLEL 300
  301 KDRWKSNNVN VTPADGMDVK CYQGECRGGF VSENVKDRYS GCEVIRGNVL VTEQSGNVSE 360
  361 RVRDLSYAHV INGSLHLINN TSLKKLTLPF LKEIYSTQCP ALVIQNMSNL TDIIFHSHIE 420
  421 FNCNSTGPKV LIRNSPKLYL YHQTLEQMRK AGAILDDFNS ETDTYSENST FYLVGLCVLI 480
  481 VIFVEIAWAL RKNLLFPNWI YRIFPMSIKR KLKQKQPRKK KEE

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	469	0.99
Transmembrane Helix	470	490	0.90
Cytoplasmic	491	523	0.92