YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39593313, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEEKLLVGI ASLASTIAIL ACVVVIPGLY STINEMHDEV IDGVKVFRVE TDAAWVEMLD  60
   61 VQVMVAPPSK PKENPFNSVF RQKRRSTYAS LPSWCQCEPA KPRCPPGPPG PPGHPGQRGI 120
  121 PGIPGRRGQD NHNTISPPAC PARDPECVKC PAGPPGPSGT CGPVGRPGPD GRPGQPGRRG 180
  181 NDGRPGQPGP QGNAGQPGRD GRPGQPGHPG KDGRRGHGAP GAPGRAGQPG RAGAPGHPGK 240
  241 PGERGPHGYC GPAGRPGQQG NRGSDGHPGA PGNPGLQGSD AAYCVCPRRS VMFLNRH

Type	Start	End	Confidence
Signal Peptide	1	21	0.51
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	297	0.94