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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|4586626, gi|2...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGDSFSMSI ENLPDSPMGS RKKKMQIRKV FDKMTEWVTP WRSNLESPRE MMILRGDVEQ  60
   61 DEFQYASSHC LSSYYSVFVV RLAIMVMLAI LIGLLTVLTW HFTRIYTKQS LQTLAYGLRY 120
  121 ELLQRPVLRM WSVLNTTSEL TTAQVKLSEY VIKKYDKPTT QEELVEMYQA MKDVTWALFA 180
  181 SAKALNAITI NYRNGFVQAF HRDPASSSTF YIFSDLKNYS ISGTGPEDVS GWNNKSIHGN 240
  241 MSAIWYQQQL DPVTGENLGK PLKIPPDDLI NIAGISQVPD GEASWHVTVS KYMDSPLLSA 300
  301 ALPVFDASNK SIVAVVGVTT ALYSVGQLMR DLVEVHGGHI YLTSQEGYLL ATSTDGPLLK 360
  361 NTSNGPQLMK ATDSEEWVIK SGAQWLEKTY GSKRPHVVHA ENVKLGDQRY YIDSFYLNLK 420
  421 RLPIVGVVII PRKFIMGKVD ERAFKTLIIL ISASVCIFFI GCVCILILTN GVSKEMKLRA 480
  481 ELIRQLDARR RAEASSNYKS QFLANMSHEL RTPMAAVIGL LDILISDDCL SNEQYATVTQ 540
  541 IRKCSTALLR LLNNILDLSK VESGKLVLEE AEFDLGRELE GLVDMFSVQC INHNVETVLD 600
  601 LSDDMPALVR GDSARLVQIF ANLISNSIKF TTTGHIILRG WCENINSLHD EMSVSVDRRK 660
  661 PWAPMKTKQV QHRNHLQKSC KNANKMVLWF EVDDTGCGID PSKWDSVFES FEQADPSTTR 720
  721 THGGTGLGLC IVRNLVNKMG GEIKVVQKNG LGTLMRLYLI LSTPDTVDQN IQPDFSKYGL 780
  781 VVMLSMYGST ARMITSKWLR KHGIATVEAS DWNELTQIIR DLLETGSRDN SFDSQHNISD 840
  841 PLRAELSNIV EIKNPVFVIV VDIGVLDLTT NIWKEQLNYL DRFSNKAKFA WLLKHDTSNT 900
  901 VKTELRRKGH VMMVNKPLYK AKMIQILEAV IKNRKRGLCN DLRNRGNGSD ESHDCLEIDP 960
  961 TQFDTCSSDD SSETSGEKQV DKSVKPSTLH SPVLKNYLID ATTSNDDSTS ASMTQKNPEE1020
 1021 EDWKDRLYSG IALDGKNQKS LEGIRFLLAE DTPVLQRVAT IMLEKMGATV TAVWDGQQAV1080
 1081 DSLNYKSINA QAPTEEHKSF EEETANKVTT RETSLRNSSP YDLILMDCQM PKMDGYEATK1140
 1141 AIRRAEIGTE LHIPIVALTA HAMSSDEAKC LEVGMDAYLT KPIDRKLMVS TILSLTKPSA1200
 1201 FQTSLSA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle