YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39592987, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFYPAITL FSLVSMTSAT GHLRLELTSS EHCTLHLKTS SSFQALRLNM GITRIVSFHP  60
   61 KVNQKTIEIA FFKGGSPPQS YVYEMETSNG TSYQTFIFSQ TVILVQSFFE CDSGFYGYHC 120
  121 NDRTTSTSTT SSTTTPVSPA TSGTTKVKVV TETSPGRSMA PISTNTFLCG SLMIVIVILL 180
  181 ALICTICILI RSSHQNIYIQ PQAPTPIKTK CKITIEDSEC YSPESVRYTA APFKSVTISL 240
  241

Type	Start	End	Confidence
Signal Peptide	1	21	0.93
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	166	0.96
Transmembrane Helix	167	190	0.90
Cytoplasmic	191	240	0.95