YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187034003, gi...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEREPARVS GMTTEDFNVL LRSMEGQFQI NLARPWAHES DQGGVQRLIA DNAIIVKNKN  60
   61 LVDEKTGRIN SNSNPEILKK ICSYVQCEGV GDQCIDSFVP FGHCCPVCGT RINFYAVDLN 120
  121 ITAAKYEFFL AMKRLENSPE VFGTLEKTAK DNLGAEYEIA IINTHNSTYD EDFHKLAEKE 180
  181 MAKELLKLLS KQLTSFGTIK TFSSRIDRTI KTSSKIAASL IYFTVIVVLV GMYAYRYGDL 240
  241 RLPRATVFTP VIRYKRQEDD VAIEMEGGAE EEEEEQEVSE NQSEPKEPVV REKVEDVEDW 300
  301 RNINPNFELA SSSDNDGMTF EMTENVKSSE PEIQEENQNG KEGSIQDQLI GNDGVDVQDA 360
  361 EKGPEKSLQE TVEGLTEEEE PEDTEFGDIN PNFESESEMD IDSVAPELQS LSESESSSTT 420
  421 DAKSDDVADP KDDGISKENT DLLDL

Type	Start	End	Confidence
Cytoplasmic	1	215	0.61
Transmembrane Helix	216	235	0.81
Non-Cytoplasmic	236	445	0.76