YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39592277, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMIETFLGM AKYLSPREDD DWSDRLNYLI TPNLLLAFSV LISFKQFGGR PIECMFPNKF  60
   61 PGSWEQYAEN YCWSQDTYFV EPTQDVSLLK QEERYTPDRQ LSYYQWVPFF LLLQAAFFRA 120
  121 PSYLWKYFSN HSGIRIHEVV EKAKDNANVE EEVREKNIGI LKRHLSSALR FQANMESKRV 180
  181 QVHKTVTFLN FQYSSGFISW VYLFTKSLYF INVFAQLYLM NYFLGTNRHQ WYGFGVVKDI 240
  241 VKGEPWERSG YFPRAAVCDF EVRQVANIQR YSVQCVLVIN IFNEKIFVLL WFWYLILLFA 300
  301 STVSFIQWFV VLVFPCFSNW FVKQHLALST LQHFNQRNSR RENADVSKFV TQYLHKDGVF 360
  361 VLRMVSSHAG IIFATDLVQA LYEAYDFQDK NKLDQGSPVS DDLQTISTGT GSSIRQRKNK 420
  421 KSSRIEYKPG TPFTTTLMPE KDDIESSSTS SEEDQKRVSN GVTNI

Type	Start	End	Confidence
Cytoplasmic	1	102	0.66
Transmembrane Helix	103	123	0.63
Non-Cytoplasmic	124	197	0.61
Transmembrane Helix	198	220	0.69
Cytoplasmic	221	289	0.69
Transmembrane Helix	290	311	0.91
Non-Cytoplasmic	312	465	0.60