YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187020983, gi...
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITSQPYNR LKEALFYNRA TSKYVLLLLV FISAVLLIGS VFQDEKAESL FPVLSTRKVN  60
   61 PVFDAFYNCV YPKIIGQKDN YDRFWLLYVH LTEECDNLPE YKTFDLQPIA NTDEIKYVSF 120
  121 PKQKEENITM VTLGIGHDVD AELRLKKMWP GTEFFGVDPS PEINKDLYEV KLGGNYFQVA 180
  181 VSGQGGMQKS YIFRKKYRDE TTMHIGADYF FGNMLKRPRV DILWVDTEGN EFPVLDMIHR 240
  241 GGPLDRRGVK ICQMNVEIHK DLLKDVTGEK QKFHDFVWKI MEDRKYIIVK PFYVYWFHDF 300
  301 IRVVVLNVED PECTSLYMR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.59
Transmembrane Helix	21	42	0.58
Non-Cytoplasmic	43	319	0.99