YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39592188, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASELLQQQ FFREWNFSSR LLFYSIIAVT SFTLPVLVLI LALIRPHRNS QYFPYMCGII  60
   61 SGNFVLLSTI FTMVVAENVH IVYYYFPGYL ICKISTFVVN SASCFIHWTW VGMYAQRFIH 120
  121 VFFPLRSRRK LPRSSWNTLL IILGLSCVCQ IWAPITITER HVNHENGTSG TYCAEHPYFS 180
  181 SSSKIIVLVE STITFFIPFM LTVLADISVL VSKVPWQTPF KLISADDLRS NNRSDNMKIV 240
  241 SRLNLEYAEK RRIIAIKRCL VSATFTLVLN LPNYVLQLID EFYKLRVHED ISVRRVFLQA 300
  301 DAAVYILYLL QFPLVPVNMY FLRQNITRSS RKLREKTTLQ QEHSRSFQVL EMSNDRVPLS 360
  361 TTILSPTSIP

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	44	0.94
Cytoplasmic	45	51	0.91
Transmembrane Helix	52	75	0.88
Non-Cytoplasmic	76	89	0.79
Transmembrane Helix	90	114	0.81
Cytoplasmic	115	134	0.90
Transmembrane Helix	135	156	0.93
Non-Cytoplasmic	157	185	0.96
Transmembrane Helix	186	211	0.78
Cytoplasmic	212	258	0.91
Transmembrane Helix	259	276	0.79
Non-Cytoplasmic	277	301	0.82
Transmembrane Helix	302	322	0.84
Cytoplasmic	323	370	0.86