YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39592158, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.99
Transmembrane Helix	103	124	0.95
Non-Cytoplasmic	125	160	0.94
Transmembrane Helix	161	183	0.89
Cytoplasmic	184	208	0.89
Transmembrane Helix	209	228	0.60
Non-Cytoplasmic	229	270	0.57
Transmembrane Helix	271	295	0.84
Cytoplasmic	296	305	0.59
Transmembrane Helix	306	327	0.89
Non-Cytoplasmic	328	355	0.66
Transmembrane Helix	356	376	0.95
Cytoplasmic	377	394	0.89
Transmembrane Helix	395	416	0.93
Non-Cytoplasmic	417	465	0.92
Transmembrane Helix	466	489	0.76
Cytoplasmic	490	490	0.47
Transmembrane Helix	491	514	0.79
Non-Cytoplasmic	515	530	0.80
Transmembrane Helix	531	554	0.62
Cytoplasmic	555	560	0.62
Transmembrane Helix	561	578	0.49
Non-Cytoplasmic	579	796	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRGRVRTS SNSLDPNEDP VSGLERVMSN SNLEQMARQR RRHEEELLFS RQIEESDRTD  60
   61 SHEALSARYE SLNYEVSENR LYRDAEKKPS HQLTLWRISR NRWFVCFLIG VFTGLVAAFI 120
  121 DIMVHYSKDI KFNWILKYLI SKCGEEQRGT TAGCMWTVMI AWIGYNCVLV TIAAILVIYV 180
  181 APIAGGSGIP QIKCYLNGIA IPEVVRLKTL VSKAIGVACS VGGGLCAGKE GPMIHSGAAV 240
  241 GAGVSQGKSY SLGIDFGVFR EFRNDRERRD FVSAGAAAGV AAAFGAPIGG VLFSLEEGAS 300
  301 FWNQNLTWRM FFSAMISSFT VNWILSWFNG RSGWLSWTGL ANFGIFENKD YNIWEIPLFL 360
  361 LIGVIGGCLG ALFNYLNTRL TEFRKKYVSS KFGRLFECLL VAAVSGFLAF LTIFAIDDCQ 420
  421 PIGANPTATS TQINQMWCKK GEYSAVASLF FQNPEESVKS LFHSPINSFG VMTLVIFGIE 480
  481 YFLLTLWTFG ISVPSGVFIP AILTGAAWGR LFGILVERLF PSVTGIDPGK YALAGAAAQL 540
  541 GGVVRMTISL TAIIMEATKD ITFGLPIMLV LMVTKWVGDM FNEGLYDSHI DLAEVPILGW 600
  601 NPPKMSRNIL ADRVMRKDVV ALERRERVSR IVEILRSTLH HGFPVVDRIE ESPYESLPDY 660
  661 GRLKGYILRS QLFKLLENRI FEEEGTSSNA LPNDFYECQD DDDQMKSLND LGLTQYDESC 720
  721 WLDIEPYMHP HPHRVPLNTS LPFIFRLFRG LGLRYLFVVN DDNHLRGVIT RKDVARFRER 780
  781 RRNHEYHVDE LYISES