YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39592136, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDTNIVAN RPQCDFNWCG DFGTCIVLNP GETTEWYECI CGLWQSGQDC QLEVPLPVVV  60
   61 TLTCTVLVSF VLYFCWYSSH RFNKKKIHQP KARYRFADYL QKHQKFEKLW LKSKLEEDNK 120
  121 KTGKTRNIPY EEETDQEHEK QKKEKKEEEE KNEEVVKPQK PVQKSEKTKR TEELSIVQEE 180
  181 KKLGVFKDPQ ENKVIESSTK STKQVEEYKV DDAPAPSTRS DLSSSASGGM SGGMPELPAD 240
  241 APDDCKKHHE KEKLREKQNE AEAERKSIDR NKPKKSSKKG KKKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.82
Transmembrane Helix	54	77	0.75
Cytoplasmic	78	284	0.66