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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|187021134, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAISISLL LFLFPINSPN PSSSNFLDIG TTYQAVDYGI ATDQHQQCIA WKLWWKTQKS  60
   61 LQDPSASDID LLALRRAEVW IRNENDAEKY DVPVELLQNF STIRIVFRNV CRLFPRVLQI 120
  121 SSPLAARRSR ITLDVLCQTY NYSDPEANEL VLNNYEEAQE NAIGIDQLLF LDHQSVMIVM 180
  181 PAACNSSEND EKEIAKQYYL EKYGDFSFNV SNLNIEMDKL HEMVHDLKPL DQIMSENLGL 240
  241 DYQRPLPSST ILPFLRKIEY DARQPPTLHV DDTVTVKVGI SVQSMSNFEL STMARYDLDA 300
  301 WVRMSWIDPR LRHDLSRPIL VNDYTFLKMI WRPDPIFTNA KYSTFHKVTY LNFYLFIFPD 360
  361 GKIFMDMRVY LKPTAAQIIE KNVRIPELSI RHLHPDICNG VRKSGVYSCL EAKFYMHREV 420
  421 GYHIANTYIP TAICVVFSWI SVWLPEEFVE GRIFVSLTVF LTLSAENNSA KEELPKVSYV 480
  481 KAIDIWFGFT STFVFVTMLQ ALVVISLEHN SKRLRLKSES NLDGYSKYQV TKSMLLSRYY 540
  541 HRMARQIDTF CKVMYPVIFI LFLMFYVFVI TQGDERKCIK N

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle