YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157762738
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIASYFLAG VLMSISRLAW LICDLFWVPI DQMEILMYSR LVFQTSIAAH LFVLSAERAI  60
   61 ATCRSKQYEQ NSCYPVIILC CILTYPYSLL QLYSKYNFEK GREINVVLYL GAAVVSFLIL 120
  121 MIVYRVNKKK VKERRFKGPI SEAYQVRENI RTSRLLLKIF IIFSFFVGLS TYFLLRFSAS 180
  181 LTDPKQKWVT ITNGFLYDML ISTGTTTTTI VFLHFLIPDE TQKKWSHILH LSCYNHNVTP 240
  241 ESKRLRFKSI HGVDVDVGNG TKHFLTLTHF KKIMSDAIFT RSEVSMHCGE DDCWIIVGNY 300
  301 VYDVTKFVDM HPGGPEILLE FAGGDATDAF ESVGHSMCAR MMLTKFKIGS LPEEERPDFV 360
  361 QAEYITHAKI SLPMAH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.83
Transmembrane Helix	7	28	0.90
Non-Cytoplasmic	29	35	0.82
Transmembrane Helix	36	56	0.81
Cytoplasmic	57	71	0.81
Transmembrane Helix	72	90	0.93
Non-Cytoplasmic	91	105	0.87
Transmembrane Helix	106	126	0.95
Cytoplasmic	127	154	0.97
Transmembrane Helix	155	175	0.94
Non-Cytoplasmic	176	194	0.91
Transmembrane Helix	195	217	0.86
Cytoplasmic	218	376	0.93