YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157762778
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.90
Transmembrane Helix	114	134	0.56
Non-Cytoplasmic	135	139	0.45
Transmembrane Helix	140	157	0.59
Cytoplasmic	158	163	0.52
Transmembrane Helix	164	183	0.57
Non-Cytoplasmic	184	209	0.46
Transmembrane Helix	210	233	0.84
Cytoplasmic	234	240	0.32
Transmembrane Helix	241	261	0.74
Non-Cytoplasmic	262	284	0.58
Transmembrane Helix	285	308	0.78
Cytoplasmic	309	325	0.68
Transmembrane Helix	326	345	0.85
Non-Cytoplasmic	346	373	0.68
Transmembrane Helix	374	394	0.84
Cytoplasmic	395	410	0.64
Transmembrane Helix	411	431	0.70
Non-Cytoplasmic	432	436	0.36
Transmembrane Helix	437	452	0.77
Cytoplasmic	453	453	0.01
Transmembrane Helix	454	468	0.67
Non-Cytoplasmic	469	469	0.34
Transmembrane Helix	470	488	0.89
Cytoplasmic	489	504	0.52
Transmembrane Helix	505	533	0.80
Non-Cytoplasmic	534	747	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPPKKSSKT RHLSEAEEES ENYLENFYNK NERSNRRVSF VQRGAMNQAQ FDEKFDYNKP  60
   61 HMENLVKKQT RKFVSRFYEP FLSCNAFKNF LFDLIPILKW LPEYRWKTDL TPDIIGGLTV 120
  121 GVMQIPQGIA YALLARQPAI NGLYASLFPP LIYMLFGTSK QSSLGTFAVV ALMTGISVES 180
  181 LTAPEETAFN ATDVLDPAEV IKEYPTATEV SCAITILMGL ILFLMGVLRL HFLTTYLSDQ 240
  241 VIAGFTVGSS IHVFVSQLKT LLGIRRLTRH SGAFYLFRHL YDLVLALPRF NPVSLGISVG 300
  301 SLIILYIGRE FVNPFIKKKT KSNIPIPWEL VVVIVSTAFV YFSGVNASSA VQIVNKIPVG 360
  361 VPEFAVPRFD IFKHVFSDAI SITIVSVSVW LSISKMLAKK NNYQLDAGQE LFALSFTSIA 420
  421 SSFIPTIPIS CSLSRTLVAV GAGCVTQLSI LFSSILVFLV VFFLGSLLET LPMAALSAII 480
  481 CFALQGMFKK FYDLGQLWKV SKIDFTIWVV SCGSTVILDV SIGLIISVFF ALFTTILREQ 540
  541 YPKWHILASV KGTQDFKDSE RYGDSMYFKG ICIFRFDAPL LFHNVECFKK SVDKAYLEWQ 600
  601 KSHEFYVLRE ERDTILNHKM DGSDESSDGK TVHTMNTMSA DILSRHFVID CSGFTFIDLM 660
  661 GVSALKEIFS DLRKRGILVY FANAKAPVRE MFDKCDFFKF VPKENFYPTM RDATSIARQR 720
  721 QLELGFKDTT YVPEHDRLTE VLSSHPM